STRING: Search for Tandem Repeats IN Genomes
The algorithm is described in the paper:
V. Parisi, V. De Fonzo, F. Aluffi-Pentini.
STRING: finding tandem repeats in DNA sequences.
Bioinformatics, Vol. 19 no. 14, 2003, Pages 1733-1738.
Supplementary material for the above paper:figure1 from an autoalignment (phase 1) to an alignment (phase 2)
figure2 flow-chart of the algorithmtables results
Academic version of the algorithm
(it can be freely used, but please reference the above paper)
About Dynamical Genetics
V. De Fonzo, E. Bersani, F. Aluffi-Pentini, V. Parisi
A new look at the challenging world of tandem repeats.
Medical Hypotheses,Vol: 54, Issue: 5 , May, 2000.
Last updated: Nov 2007